Bug #773
The alignment tool limits the number of sequences per viral isolate
| Status: | Resolved | Start date: | 03/29/2011 | |
|---|---|---|---|---|
| Priority: | High | Due date: | ||
| Assignee: | Stijn Imbrechts | % Done: | 0% | |
| Category: | - | Spent time: | - | |
| Target version: | - |
Description
Originally reported by Yoeri, verified by Fossie.
Severity
Major bug
Component
Patient >> Viral Isolate >> add
Summary
When adding more than 5 sequences at the same time to the same (new) viral isolate, the alignment fails.
How to reproduce:
Add a new viral isolate (don't use an existing one) >> add 6 sequences to the viral isolate >> save the isolate.
Actual result:
Alignment gets stuck.
Expected result:
Alignment should run as normal.
Note:
During verification, using sequences other than those reported, 6 sequences per viral isolate worked fine but 7 didn't. 6 sequences showed alignment results after 11 seconds while with 7 sequences there were no results after 5 mintues.
History
#1 Updated by Stijn Imbrechts almost 2 years ago
- Status changed from New to Resolved
issue in wts StartImpl, external process blocks when it writes too much to stdout/stderr
worked around it by changing the service so it only outputs to files instead