Feature #885
Refinements to the user interface for the similarity tool
| Status: | New | Start: | 07/01/2011 | ||
|---|---|---|---|---|---|
| Priority: | Normal | Due date: | |||
| Assigned to: | Stijn Imbrechts | % Done: | 50% |
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| Category: | - | Spent time: | - | ||
| Target version: | - |
Description
REPORTER:
Kristel (via email 1 July 2011, edits by Fossie)
PLATFORM/OS:
RegaDB v2 (Gasthuisberg installation)
COMPONENT:
Viral isolate similarity tool
SUMMARY:
The similarity tool will be used for QC (sample mix up etc.), but could also indicate potential transmission clusters. To make the tool more useful, please add a column for the EMD number and also add a grid export option (besides the fasta export). The grid export should create a csv file containing all the information currently shown in the grid (EAD, EMD, sample ID, sequence label and similarity value) as well as the original sequence.
REPRODUCE:
Click any patient with a sequence >> click viral isolate >> click the similarity tab >> edit the parameters and click show to return a few lines of data
ACTUAL RESULT:
The grid displays data on similar sequences found in the database with a fasta export option
EXPECTED RESULT:
(1)Besides the current fasta export, a csv export option of the currently displayed grid.
(2)As an additional column in the grid, the EMD number.